Sentence examples for conservation was calculated using from inspiring English sources

The degree of conservation was calculated using the ConSurf Server (http://consurf.tau.ac.il).

Electrostatic potential calculations were generated using APBS tools (Baker et al., 2001), surface sequence conservation was calculated using CONSURF (Ashkenazy et al., 2010) and interface areas of proteins were analyzed with the PISA web server (Krissinel and Henrick, 2007).

Then, the nucleotide sequence conservation score was calculated using the following formula: ((nucleotide match-length)* nucleotide identity/100))/(nucleotide length of the candidate sRNA).

The nucleotide conservation score was calculated using the following formula: [(nucleotide match-length)* nucleotide identity/100)]/(nucleotide length of the candidate sRNA).

The conservation index was calculated using the following equation: where G denotes the set of genomes used in the present study, q is each genome selected from G, and Cq and Rq are the conservation rate and the reference conservation rate in q, respectively.

Overall, the rankings are quite similar and indicate that the approach taken with the HCT model is acceptable for our prioritization model.> -wrap-foot> The bold letter indicates the top 30%% of overall subwatershed ranks Marginal change in total sediment load per conservation dollar invested was calculated using Eq.  1.

Amino acids are shaded as a function of conservation with a 30% conservation visibility cutoff that was calculated using Clustal.

The conservation degree of the alignment was calculated using PLOTCON (31).

Evolutionary conservation of protein-coding genes was calculated using OPTIC (Heger and Ponting, 2008).

Sequence conservation among our five phages was calculated using the mavPercentConservation method based on the AL2CO algorithm [ 48] which performs calculations in two steps.

The average phastCons score per gene model was calculated using the Conservation track (phastCons7way) of the UCSC genome browser.