Sentence examples for conservation probabilities from inspiring English sources

An alternative description that can be useful to adopt assigns conservation probabilities to edges and to the number of nodes conserved in a duplication subgraph.

PhastCons uses genome alignments of 17 species and a continuous-time Markov model for nucleotide substitutions and a two state phylo-HMM model to compute posterior conservation probabilities.

To score the COGs both for variation and conservation, probabilities were estimated from frequencies in the dataset.

For each residue, a 20-dimensional vector was calculated to denote the conservation probabilities of mutations to 20 basic amino acids.

And the conservation score of this predicted CRM reflects the highly conserved tendency of the sequence (conservation probability = 0.56), indicating the potential regulatory functionality of this sequence.

Even though not all yeast SL pairs are expected to be conserved in distant organisms, those associated to essential functions have a higher conservation probability.

PhastCons requires a conservation probability parameter; we mapped the conservation probability parameter to DNA coverage proportion in order to achieve comparable statistics across regulators and conservation measures.

A mapping of conservation probability to DNA coverage proportion for the seventy TFs is given in Figure S1.

The standard practice has been to constrain the scanning with PSFMs to only those regions of the genome whose conservation probability (or score) is sufficiently high [29].

We evaluated the sequence conservation of the miRNAs based on the whole genome alignments of human, rhesus, mouse and 14 other vertebrate species by calculating the per-site conservation probability of the human pre-miRNAs.

To take this into account, for each mouse cassette exon not conserved in the human or dog genomes, we considered all pseudoexons with same length and calculated their residual conservation probability.