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We also assessed the conservation pattern for these variants using multiple alignments of nine different mammalian mitochondrial sequences.
The monocots (Z. mays and O. sativa) follow more or less a similar conservation pattern for encoding the translocon components.
In conjunction, it is possible to deduce a functional conservation pattern for Gammaproteobacteria, where some metabolic maps contain a biosynthesis-related core of similar enzymatic steps, and some variable steps that include the degradation of various compounds.
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The comparative analysis was performed to obtain a better model of conservation patterns for the N-glycosylation and O-glycosylation sites.
We compared the sequence conservation patterns for miRNAs associated with 5′ (seed) or 3′ (nonseed) motifs.
By first exploiting the homology between genomes of two related species, a probability model for the evolutionary conservation pattern of codons across different genomes is developed.
Conservation pattern of insulin receptor family was also determined [38].
For example, the conservation patterns of H3K4me2/3 and H3K27ac in human, mouse and pig pluripotent stem cells are in concordance with the conservation pattern of ZFP42 expression levels.
We examine the conservation patterns of residues/motifs for each MoLFunC set, based on experimental evidence of their importance for specific functional characteristics that all proteins in that set should display.
We assume that positions with such conservation pattern account for differences in the specificity between proteins from different specificity groups.
In order to select among all the clusters generated by Hieranoid those that showed the conservation pattern known for AM-related proteins, we performed in silico substraction by selecting protein clusters that contained at least one protein of each of the 6 AM-competent species, but none of the non-mycorrhizal species Ath, Aly, and Bra (Task6).
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