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Conservation levels of the OmpR and its regulon genes across Escherichia, Shigella, Salmonella, Yersinia, γ-, β-, and α-proteobacteria are illustrated by the ortholog calculation.
In alignments across other Drosophila genomes, conservation levels of sequence elements exceeded 90% within the melanogaster subgroup, but dropped considerably for distal species.
We further examined conservation levels of identified TSS and promoter regions.
We next divided all exons into five bins based on evolutionary conservation levels of the exons among 18 placental mammals (see Materials and Methods).
The evolutionary conservation levels of rpdA and hosA are the second and third highest among the 110 proteins related to fungal histone-modifying protein complexes, respectively [25].
To compare the conservation levels of the mononucleosome positions around the TSSs, we calculated the squares of Pearson's correlation coefficients between the profiles of the mononucleosome mapping numbers of the TSA-treated cells (15-min treatment with MNase) and the untreated cells at 300 nt downstream and upstream of the 557 TSSs (with more than 1000 sequence tags).
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The LNK exons are as conserved as constitutive exons and the conservation level of the ME exon is roughly equal to the individual cassette exons in exon skipping events with only one exon skipped (data not shown).
To answer this, we compare the conservation level of CNSs that have been lost in mouse but conserved among human, marmoset, and chicken (see table 1).
Conservation level of ompR and genes of OmpR regulon were calculated from orthologues retained from RAST output.
In a case study we estimated the optimal conservation level of Large Blue butterflies (protected by the EU Habitats Directive) in the region of Landau, Germany.
The community of fig trees was robust to variation in forest structure and conservation level of SSF fragments, making this group of plants an important element for the functioning of seasonal tropical forests.
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