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Pollard et al. used a likelihood ratio test approach that compared the branch lengths for each element with what would be expected given a genome wide model for conserved elements rescaled to the conservation level of the given element [ 5, 6].
The LNK exons are as conserved as constitutive exons and the conservation level of the ME exon is roughly equal to the individual cassette exons in exon skipping events with only one exon skipped (data not shown).
To answer this, we compare the conservation level of CNSs that have been lost in mouse but conserved among human, marmoset, and chicken (see table 1).
Conservation level of ompR and genes of OmpR regulon were calculated from orthologues retained from RAST output.
In a case study we estimated the optimal conservation level of Large Blue butterflies (protected by the EU Habitats Directive) in the region of Landau, Germany.
The community of fig trees was robust to variation in forest structure and conservation level of SSF fragments, making this group of plants an important element for the functioning of seasonal tropical forests.
RGA primer sets, designed on 17 reference RGAs, amplified additional RGA sequences from two hop genotypes which served for the development of 11 RGA markers of which eight amplified PCR products of expected sizes also in various hop cultivars, indicating a high conservation level of RGA sequences within the hop genome and two RGA markers segregated in the mapping family.
Such sampling had undoubtedly achieved very high conservation level of "alternative exons".
Figure 4B shows the relationship between the conservation level of exon region (X axis) and the conservation level of upstream intronic region (−46, −18) (Y axis) for conditional exons (upper panel) and constitutive exons (lower panel).
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Conservation levels of the OmpR and its regulon genes across Escherichia, Shigella, Salmonella, Yersinia, γ-, β-, and α-proteobacteria are illustrated by the ortholog calculation.
In alignments across other Drosophila genomes, conservation levels of sequence elements exceeded 90% within the melanogaster subgroup, but dropped considerably for distal species.
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