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Third, the conservation is lower than those of above two types, whose domains are only found in Pfam-B, which supplements the databases' principal body (Pfam-A) and contains small families of proteins.
Conservation is lower outwith these domains, and the estrogen-related receptors alpha and gamma lack an F domain.
Its conservation is lower than that of two structural proteins, histone H3 and β-actin, but is comparable to that of CDK1 (Table 3).
The high level of synteny between U. maydis and S. reilianum allowed detection of 43 "divergence clusters" in which the sequence conservation is lower than average and many of these clusters encode effectors.
In any case, since there are many more male-biased genes in each species that lack orthologs (and consequently cannot have conserved expression), limiting our analyses to orthologous genes artificially inflates the proportion identified as having conserved expression and makes the proportions in each sex appear the same (38%) when in fact conservation is lower in males.
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Whereas the sequence conservation was lower between the CCR promoter sequences, showing 88% sequence identity within the first 500 pb upstream the transcription start.
> -wrap-foot> Whinvestigatingtheg the conservation of candidate pathogenicity clusters within the species (table 2), a high degree of conservation of candidate pathogenicity clusters among the graminicolous species was observed, conservation was lower in Me. pennsylvanicum.
Indeed, conservation plots of 3'UTRs (Additional File 2) show that the overall conservation level is lower in the interior parts of the UTRs.
Although lncRNAs in different species share some conservative genomic features, sequence conservation of lncRNAs is lower than protein-coding genes in different species [ 18].
This level of conservation we observe is lower for the set of protein-coding genes we have newly annotated, e.g., 79percentt for An.
This highlights that while in Phytophthora species the majority of cytoplasmic effectors of the RxLR-type seem to have a highly conserved RxLR-motif, conservation is much lower in downy mildews, which seem to have evolved a huge variety of motifs, rendering their identification less straightforward.
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