Sentence examples for conservation information from from inspiring English sources
According to the protein conservation information from multiple alignment of the ppk family, we rendered a general Drosophila PPK model.
In this study, the model was improved by using a phylogenetic tree-based scoring function to incorporate evolutionary conservation information from more species.
Thus the pieces of conservation information from both groups can be utilized, yet they were treated differently to reflect potentially different implications on conservation from the two groups.
(ii) Evolutionary conservation information from PSIC (Sunyaev et al., 1999), PSI-Blast (Altschul et al., 1997) PSSMs and frequency scores from runs against PDB (Berman et al., 2000) and UniProt.
The VEEDB database provides exon conservation information for each given exon based on splice site conservation, this being extracted from a 17-vertebrate UCSC multi-genome alignment [ 57].
Another set of tools, the Mulan, takes advantage of evolutionary conservation information obtained from multi-sequence alignments of several genomes [ 39].
Conservation information comes from two sources, one APPRIS module counts the numbers of equivalent vertebrate orthologues in the protein databases, whereas a second, INERTIA, calculates exon evolutionary rates using three separate sets of cross-vertebrate transcript alignments (53– 53).
For each CASP target, we downloaded conservation information, if available, from the ConSurf-DB database entry for the native structure.
Using data from a water conservation information campaign implemented as a randomized controlled trial, we estimate heterogeneous household responses.
The remaining data not translated from BIND includes sequence conservation information (BIND-cons), binding sites (BIND-binding-sites), binding actions (BIND-action) and binding states (BIND-state).
Figure 7 shows that, our feature extracting method can effectively extract the local conservation information of residues to distinguish the AIRs from non-AIRs.
