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Our approach uses single protein structures, and does not rely on sequence conservation, comparison to other similar structures or any prior knowledge.
The conservation comparison is listed as Table 3.
The TIGR rice (Oryza staiva) genome mRNA database was used for evolutionary conservation comparison.
Similar(57)
The fluids are inviscid, which allows a detailed study of energy conservation and comparison of the results with a reference solution given by a boundary integral solver.
Weak solutions of the present problem were obtained resorting both to the distribution theory and to the integral formulation of momentum conservation: the comparison of these two approaches allowed us to give a physical insight into the meaning of the nonconservative term across a discontinuity.
This conservation allows comparison among species.
It is now recognized that these organisms have undergone extensive gene loss and that the Cnidaria have a higher level of gene conservation in comparison to vertebrates [ 52].
We deduced a model for protoH3 of the last eukaryotic common ancestor (LECA) confirming a remarkable degree of sequence conservation in comparison to canonical human H3.1.
Consensus sequences based on these alignments were then used to identify regions of sequence conservation for comparison with known structural and functional elements and alignments were used to construct phylogenetic trees.
Because it was expected that recent gene duplicates would share a high degree of similarity, the low level of glnA4 and glnA3 sequence conservation in comparison to the glnA1 and glnA2 sequences suggests that these sequences either may have undergone rapid evolution after duplication, or have been derived from separate lateral gene transfer events during the speciation of the later actinobacteria.
In the annotation of candidate loci for inter- or intragenomic sequence conservation, BLAST comparisons were conducted not between the sequences of the putative RNA-encoding loci, which were often quite short, but between the entire IGR sequences containing these loci.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com