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As this M. truncatula genome release is preliminary and incomplete, it is likely that future genome releases will reveal syntenic clones for white clover regions A and D. In contrast, despite a greater evolutionary distance, L. japonicus genome comparison have obtained impressive levels of conservation (average 84% synteny quality) for all corresponding white clover regions.
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The results show that, in current conservation institution, average clustering coefficient and average weighted degree rise with the increasing dispersal distance of species; besides, landscape connectivity is rather low, while long dispersers have larger connectivity degree and resilience compared with short ones.
Missense variants in VWS and PPS had higher conservation scores (average, 10.64) than missense variants in 1kGP/ESP5400 (average, 7.31); this was statistically significant (P = 8.14 × 10−16).
We have now calculated the correlation between levels of conservation and average minor allele frequency for each gene, for SNPs used in our analysis.
The survey also gathered data on the degree to which users were already practicing some forms of water conservation, their average monthly water bills, and their annual household incomes.
The results showed that 15 CpG positions ("Conserved CpG" in Additional file 1: Table S2) had significantly higher conservation scores (average phyloP score > 1.3) and that this number was significantly higher than random expectations (P = 3.56E 09 from a Z test using the phyloP distribution of 10,000 random selection tests).
As all families exhibit a high degree of primary structure conservation, the average amino acid identities ranging from 37%to87%7% among plant genomes, all SDRs sequences from Angiosperms can be analysed easily on the sole basis of sequence alignment, using very classical software (Blast, Multialin, ClustalW).
Intergenic regions are poorly conserved, with an average conservation score of 0.124, while 3' UTRs display a more elevated conservation with an average of 0.233.
The phenomena of frequency splitting and degenerate modes can be proved either based on the conservation of averaged mechanical energy or by the concept of crystallographic symmetry groups.
In this work, we combine Biot's poroelastic equations and the fluid mass conservation equations averaged to obtain a system of differential equations for the pore pressures and saturations of the wetting and non-wetting phases.
We estimated the conservation by averaging this value for all region entries.
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