While low intensity couplings between distant residues in the structure are a trivial consequence of the distance-dependence of energy functions, local low energy couplings identify sites whose interaction-networks are not energetically optimized.
We explored the consequence of increasing the distance between the protein backbone and the phospho-acceptor atom.
With increasing values in resolution setting, the absolute values of the calculated spectrophores become smaller, which is a consequence of the larger distance between the molecule and its surrounding cage.
The decrease of closeness centrality is a consequence of the increased distance between pathways in the network.
The complexity is exemplified by the opposite sign of the peaks in the CSAM data of S3, which is a consequence of the lateral distance between SQUID and CSAM.
This is not a consequence of the evolutionary distance between the red jungle fowl and domestic chicken breeds, which elsewhere has been calculated as approximately 6000 years (Rubin et al. 2010).
This has previously been predicted using simulated data (de Roos et al. 2009; Toosi et al. 2010) but, despite the use of commercial Angus females to produce the Continental breed crossbred steers, it is a consequence of the genetic distance between the training and validation sets of animals.
One consequence of this distance is that there are fewer questions and less scrutiny about going to war.
Some have complained about the "He, Thomas Cromwell, … " clarifications in Bring Up the Bodies (when only "he" was used in Wolf Hall), but they are also a consequence of this distancing, a way of pulling us back from easy involvement.
All of this is the consequence of greater distance between the graphite plate and the substrate.
The structural consequences of these distance dependencies are that energy transfer networks can extend over large, multisubunit and multicomplex distances and take leaps of 20 Å before entering the domain of charge separating centers.
