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The consensus was constructed by applying a majority rule discarding columns in which all but one sequence had a gap.
The first 4 million generations were discarded as burn-in, and a 50% majority rule consensus was constructed from the last one million generations (Fig. 3b).
The framework for consensus was constructed through a team workshop identifying 42 statements within 7 domains.
At the time of the study, this consensus was constructed but not yet integrated in physical examination training.
The first 25% of trees sampled were discarded as burn-in and a 50% majority rule consensus was constructed for each analysis using posterior probability (PP) as a measure of clade support.
The consensus was constructed using Vicuna (Yang et al., 2012), a de novo assembly tool able to produce a linear consensus from deep paired-end sequencing data (see Section 2.3 for details).
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To avoid bias due to the different number of loci analyzed, new genetic maps of sweet orange and Clementine (male, female and consensus) were constructed using only the data generated from the 418 SNP markers that were successfully genotyped in the NC × PP, CP × NC and SO × TO progenies.
Consensus linkage map: The consensus map was constructed by integrating linkage data from the two backcross populations (KH and CK).
The consensus tree was constructed based on a 50% majority rule consensus.
As a result, 2000 trees were retained, and a majority-rule consensus tree (hereafter referred to as the Bayesian consensus tree) was constructed using these trees.
For each type of LLL method, a consensus model was constructed by averaging the results using different similarity metrics, named as "LLR_consensus", "SA_consensus", "SR_consensus", and "GP_consensus", respectively.
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