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The four raters reached consensus on 16 items (consensus coding), and three raters agreed on 22 items (majority coding).
To understand the effect of instruction type on item-type, items for which three or more raters agreed (majority coding) were used in the analyses (findings were substantively the same when analyses were restricted to the 16 consensus coding items).
We have calculated that only 53% protein consensus coding sequence (CCDS) genes interrogated by the HU133plus 2.0 would contain a CpG island around the transcription start site [14].
Recently, Roche Nimblegen has made available a microarray-based sequence capture system that targets the majority of coding exons as listed in the Consensus Coding Sequences (CCDS) collection.
For each gene, the transcribed region was determined according to the longest annotation of the transcript in the consensus coding sequence regions (CCDS) database and the region was extended with 5 kb upstream and downstream of the transcript.
The assay allows the interrogation of over 27,000 CpG sites located within the proximal promoter regions of over 14,000 consensus coding sequences (CCDS) genes throughout the genome [63].
Only sequences with consensus coding sequence citations were used.
The common core of the diverse approaches to sequence exomes represents the consensus coding sequences as defined by the consensus coding sequence (CCDS) project [ 13].
Two members of each research team coded the interview transcripts using consensus coding.
aEffect considered relative to the Consensus Coding Sequence (CCDS) for each gene.
At this point, the consensus coding stopped and individual coding continued.
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