Sentence examples for consensus alignment from inspiring English sources

After omission of these recombinant clones, composite amplicon sequences from each taxon were aligned, creating a consensus alignment of 2,061 bp with 98.8% average pairwise similarity and 2,007 identical sites (97.4%).

It is clear that the clustered alignments align the series better than the consensus alignment.

Protein sequences were aligned using M-Coffee, which computes a consensus alignment from several multiple sequence alignment programs (Moretti et al. 2007).

In a non-model, non-domestic species such as the tammar wallaby, there are insufficient BES available for the creation of a consensus alignment, and no closely related species with which to align.

When aligned across all taxa, these contigs yielded a 315 bp consensus alignment that had an average pairwise sequence similarity of 94.6%, with 282 sites (89.5%) identical across all taxa, and no stop codons or indels in any taxa.

To be able to differentiate CYP2D7 from CYP2D6, we found 10 available sequences from GenBank and other sources (see the Appendix A) and aligned them with Clustal (Larkin et al., 2007) to obtain a consensus alignment for CYP2D7.

Consensus alignments that contained all eleven probes were noted and carried forward for subsequent statistical analysis.

Probe sets with consensus alignments that mapped to a single genomic location within the assembled chromosomes were retained.

To minimize errors in calling markers, the consensus alignments with <5 or >100 sequences were discarded.

Figure 2 illustrates the consensus alignments of the virulent and attenuated strains on each chromosome.

Further analyses using multiple assemblers and removing putative paralogs resulted in high-quality consensus alignments of 3,682 orthologous genes.