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Slice-by-slice plots confirmed that connectivity of the al-EC decreased from proximal (lateral) to distal (medial) subiculum, whereas pm-EC connectivity increased (see Figure 4A and Figure 4 figure supplement 1A for data of Experiment 1 and 2, respectively).
(B ) Right parasagittal slice showing voxel-wise seed-based connectivity of the PM system restricted to the EC.
(C ) Right parasagittal slice showing voxel-wise seed-based connectivity of the AT system restricted to the EC.
For a masked AFNI image, AlphaSim ran 1,000 iterations, with a radius connectivity of 4.1 (since slice thickness + gap was 4 mm) and image defined Gaussian filters with FWHM determined with 3dFWHM.
(C ) Connectivity of the spicule associated cells.
Finally, we modelled the effect of slice cutting on connectivity by reducing the number of connections a presynaptic neuron could make by the proportion of the integral of its Gaussian connectivity profile that fell outside the slice boundaries (Eq. 3).
Pair off each of the slices.
So the slice of pizza is $37.50".
We rationale that for the majority of functional connectivity analysis (e.g., seed-based connectivity analysis), in addition to the slice-time correction, motion correction, and normalization, filtering and regressing out covariates (such as six motion parameters, white matter signal, and CSF signal) are also essential during data preprocessing [ 40].
Future research could incorporate the patchy projection model of Voges et al. (2010a, b) into our slice model to investigate how patchy connectivity affects network activity and resultant LFP across the slice.
