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Connection to the database is established via Java Database Connectivity (JDBC) and by specifying the database location and the JDBC driver, for example: This prompts for a password for the given username.
The Java language was chosen together with the Java SE (Standard Edition) platform (Java) with the MySQL Server Community database (MySQL), the JDBC (Java Database Connectivity) driver for MySQL library (MySQL et al. 2017) to allow connection to the database and the iText library (iText) for creating an RD in PDF format.
Persistence frameworks such as Hibernate for instance may cache objects that are read from the database and avoid subsequent connection to the database.
Clotho assembly algorithms [20] produce files for liquid handling robot based on information provided by the Clotho connection to the database (e.g. well location, sample volume, etc).
Before using the Java API library, a connection to the database has to be created in a similar way to the Perl API.
Before using the Perl API, a connection to the database has to be created as defined by the Perl DBI API.
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Users can access the system directly, but some access such as jobs run by Tidal and direct connections to the database are unavailable.
Qualified name of the owner QualifiedOwnerName "persistence.instantiation.helper.ExtendedConnectionVariabilities" Method to be overridden ElementName "ExtendedConnectionVariabilities.getJDBC" Value data type ElementType "String" Select supertype (aspect, class or interface) SuperType "Class" A string needed by the database connection API in order to connect to the database system.
To do so, we need a connection to the source database to extract its relational schema.
More specifically, this example relies on the Java reflection API to open a connection to the HSQLDB database manager system.
This is the only online requirement of the library, and as such, once the flat files are downloaded, libChEBI can be used offline without any requirement for a connection to the ChEBI database (see Fig. 1).
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