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Assessments of LGT using neighbor-joining (NJ) and approximately maximum-likelihood (ML) trees were congruent for all but four of the coding genes.
The genetic structure is completely congruent for all three gene regions studied.
Despite the large differences in some of the parameters the two topologies were congruent for all well supported nodes.
Morphologic and molecular identifications were congruent for all 21 birds subjected to both methods of identification (GenBank accession nos. JQ868565 JQ868585).
The results obtained using the two sets of markers (all SSRs and 24 SSRs under the assumption of neutrality) were congruent for all diversity estimators.
Of the 82 high quality SNPs, 70 were congruent for all genotypes between the two platforms, 10 were inconsistent for one of the genotypes, and two of the SNPs failed for one of the alleles in the BeadXpress assay or are homozygous for the genotypes used in this study.
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Sensitivity analyses excluding trials that used per-protocol analysis [28, 30, 31, 34 36, 38, 40, 42, 43] and trials that used control formulae containing omega-3 [36] 36] produced congruent results for all three outcomes.
Therefore, we hypothesise that B* 39-associated increased risk is due to the differences in amino acid sequence between B* 3901/ B* 3906 and B* 1402 or that the risk is associated with polymorphisms where B* 3906 and B* 3901 are congruent for almost all SNPs but do not match the B* 1402 SNP haplotype.
The maximum value of four indicates congruent richness centers for all groups investigated.
Comparisons of the inferred maximum-likelihood topologies against a concatenation of all gene alignments using the Approximately Unbiased test rejected the null hypothesis of congruent phylogenetic signals for all families (p≤0.01) implying different evolutionary histories among this group of genes.
Overall, phylogenies resulting from maximum-likelihood analyses of each of our two main data sets (UCE-70 % and 10-gene data set) are congruent in topology for all parts of the phylogeny that receive high support, with disagreements restricted only to poorly resolved areas.
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