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Using a phosphoepitope-specific antibody, we showed that phosphorylation of HDAC6 at serine-22, which conforms to the consensus site for GSK3β phosphorylation, was reduced by modulating GSK3β activity (Fig. 5H J).
A binary feature representing whether the window conforms to the consensus site was also used.
A ribosome binding sequence (RBS) that conforms to the consensus GGDGRD is present in ~50% of the predicted mRNAs.
Another conserved feature is the polypyrimidine initiator, which conforms to the consensus (Y 2C+1TY(T)2(Y 2C+1TY
The second EF-hand in SmTAL2 conforms to the consensus fold and all the potentially coordinating residues are preferred ones.
Another conserved feature is the polypyrimidine initiator, which in mammals conforms to the consensus (Y 2C+1TY(T)2(Y 2C+1TY
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The second of these motifs conforms to the consensus-binding site for the second SH3 domain of Nck [ 30].
All exon intron boundaries conformed to the consensus sequences.
SUMOylation generally, although not exclusively, occurs at the consensus motif ψKxE/D, where ψ is a hydrophobic residue, K is the target lysine, x is any amino acid, followed by an acidic residue, although lysines that do not conform to the consensus are also modified2,3.
In rat adipocytes PHAS-I is phosphorylated in at least five sites, all of which conform to the consensus, (Ser/Thr -Pro.
PrshA sequence elements −35 GGAAGA and −10 GTTAAA (Fig. 1a) conform to the consensus of σH-dependent promoters, however the expression of rshA was not found to be up-regulated in C. glutamicum by the microarray analysis (Ehira et al. 2009).
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