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Despite these apparently conflicting datasets, resolution of the IGS fragment typing was clearly greater, enabling a more detailed analysis of clinical or host associations.
To reconcile these conflicting datasets, Caccone et al. [14] proposed that the A. gambiae genome has a mosaic nature resulting from introgression between species in some chromosomal regions but not in the others.
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ǂ UNESCO report definitions based on battle-related deaths: from Armed Conflict Dataset or the Battle Death Dataset 1990 2008.
To code the key independent variable – whether or not a country is affected by insurgency – we use the Uppsala Conflict Data Programme Armed Conflict Dataset (ACD) [ 31].
We used the UCDP/PRIO Armed Conflict Dataset, version 4-2009 [ 23] http://www.prio.no/CSCW/Datasets/Armed-Conflict/UCDP-PRIO/ to select 37 countries (Additional File 1, Box 3) for this search (namely, those in which ≥ 1000 or more battle related deaths were reported during any year since 1980).
Conflicting results in datasets from different sources have added to the problem.
For each gene, the tables indicate (the log2 of) its maximum fold-induction (over all time-points) in response to LPS in all four datasets, as well as its kinetic pattern (in case of conflicting patterns in different datasets, the default pattern is in MmBMM, * is in MmRAW, and ** is in HsM1).
Nevertheless, different molecular datasets often show conflicting phylogenetic signals, so that results relying on just one dataset may be interpreted with caution [ 1].
Population expansion parameters for the overall dataset gave conflicting results.
While tree topologies inferred from the ML analysis were identical with those obtained in later analyses (see below; Figure 1), MCMC chains did not converge on a single topology, indicating that the dataset includes conflicting phylogenetic information.
The underperformance of Bayes may be due to a large amount of conflicting conditions in the dataset where a particular class out of the seven classes is highly unbalanced (biased).
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