Sentence examples for conducting alignment from inspiring English sources

To minimize the number of mismatched bases for SNP and InDel calling, all reads from each accession were further cleaned by: (1) deleting the reads that are unmapped to the reference in the alignment result; (2) deleting duplicate reads; (3) conducting alignment by the IndelRealigner package in GATK; and (4) recalibrating realignments using the BaseRecalibrator package in GATK.

Our method for conducting alignment-free comparison consists of extending the amino acid alphabet counts to counting the number of K-peptides in all protein products encoded in a genome.

They were used to conduct alignment analysis for preliminary species identification in the NCBI genomic database (http://blast.ncbi.nlm.nih.gov/) and CBS database (http://www.cbs.knaw.nl/).

We conducted alignments for the primary dataset using ClustalX, then made manual adjustments and excluded ambiguously aligned regions using MacClade 4.0.

The conservative motifs among AP2/ERF proteins in plants were clarified by conducting multiple alignment analyses using amino acid sequences of the AP2/ERF domain.

Prank [ 80] was used to conduct codon alignment, in which two protein sequences were aligned first and then DNA sequences were aligned based on the corresponding protein alignments.

First, we conducted reads alignment to human reference genome and some soft-clipped reads were extracted.

In most of the interviews conducted, the alignment between the companies G values, mission, with the principles of the agile manifesto was the key aspect to facilitate the organizational cultural change.

Additionally, we conducted simultaneous alignment and topology inference in a Bayesian framework using BAli-Phy for both the Apis and Solenopsis OBPs (AmOBPs; [4] and SiOBPs, respectively).

We further conducted sequence alignment of this 68.4 kb region with 10 other re-sequenced, non-glabrous cucumber lines.

KY carried out in vitro studies (cell culture and organ culture), participated in the design of the study, conducted sequence alignment and drafted the manuscript.