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We have shown that this is because such an effect is not involved in the probability function of the ranking in one event conditional on the parameters in the model.
A Kalman filter is used to estimate the amplitudes analytically conditional on the parameters,.
In each iteration, the expectation of the full data log-likelihood conditional on the parameters from the previous iteration, is maximized to obtain the optimal parameters for the current iteration.
To make the mechanism by which θ i influences (M_{i}^{ast }) and of (D_{i}^{ast }) perspicuous, we integrate out θ i and obtain the distributions of ( M_{i}^{ast }) and (D_{i}^{ast }) conditional on the parameters of the model and on the data.
Then, conditional on the parameters and the model, the likelihood of the data, x, is given by The goal of our analysis is the identification of the "best" network structure using gene expression data.
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The first stage obtains the conditional distribution of the nuisance parameter conditional on the parameter of interest.
Our LinReg estimator will be useful for parameter inference in any situation in which MCMC is used and it is possible to calculate <img src="http://journals.plos.org/plosone/article/asset?id=info?doi/10.1371/journal.pone.0012307.e089.PNG" class= inline-graphic"/>, the joint probability of the observed and unobserved data, conditional on the parameter.
Both random effects and response values were simulated conditional on the parameter estimates, using 1000 samples.
The true data densities (conditional on the parameter θ) are denoted by (1) for the models M i, i = 0, 1, where q i denotes the joint density of the observed data and the parameter θ, and (2) is a normalizing constant.
The CBW algorithm updates subsets of the parameters as a group, conditional on the other parameters.
Because the outfit statistic is conditional on the item parameters and θ, we calculate posterior predictive p-values (Gelman et al. [1996]).
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