Sentence examples for concordance factor from inspiring English sources

Clades on concordance trees were annotated with their concordance factor (CF) (Baum, 2007), i.e. the proportion of the genome for which the clade is true.

It was especially difficult to reconstruct in the ILS case where this branch had a low concordance factor.

The genome-wide concordance factor of a clade is the proportion of loci in the genome that truly has the clade.

Figure 6 shows the accuracy (root mean square error) in inferring the concordance factor of clades (12) and (123), two clades in the species tree (fig. 1).

Bayesian concordance analysis inferred a concordance factor of 0.541 for the Brachyteles/ Callithrix topology, whereas both alternative topologies showed concordance factors higher than 5%: 0.255 for the Callithrix/ Callicebus tree and 0.204 for Brachyteles/ Callicebus.

Estimation of the species tree was conducted with MP-EST and STAR (Liu and Yu 2010) algorithms implemented in the STRAW webserver and with the concordance factor analysis implemented in BUCKy (Ané et al. 2007).

In case a false break is used to separate two concordant neighboring loci, the site-wise concordance factors may be inferred to be identical whether the break is used or not.

The numbers depict the concordance factors in the concordance tree (right).

The numbers next to each clade in Figure 4 are concordance factors indicating the number of alignment blocks that have that clade.

Tree reliability was evaluated by sample concordance factors (CFs).

The clades' concordance factors were estimated from each partitioned alignment.