Sentence examples for concordance check from inspiring English sources
After pair-wise concordance check and further visual inspection, the genotype datasets from different arrays were merged.
The IMPUTEv2 "leave-out" internal concordance check gave 98.2 % concordance at SNPs with r ≥ 0.8 for SNPs on the 1000 Genomes reference panel but not on the additional in-house panel, and 99.2 % for those SNPs also on the in-house reference panel.
Secondly, IMPUTE v2.2.2 'leave one out' internal concordance check gave 86.3% concordance at SNPs r ≥ 0.3 and 90.1% concordance at SNPs r ≥ 0.9 with the 114 SNPs on the iCOGS chip across all 44 621 samples (for a full breakdown by r, see Supplementary Material, Table S6).
Similarly, Mendelian-inheritance error checking of the custoMendelian-inheritance error errors, checking with 2.38% human errofs identheied by concordance checking.
Concordance checking identifies only human errors, whereas Mendelian-inheritance error checking is capable of detection of additional errors, such as Mendelian-inheritance error
Inheritance checking of the commercial marker data identified that the results contained 0.13% human errors and 0.12% other errors (0.25% total error), whereas concordance checking found 0.16% human errors.
These data suggest that Mendelian-inheritance error checking is a worthwhile strategy for both types of genotyping data, whereas fine-Mendelian-inheritance errore from checkingnce checkisg than do studies using commercial marker data.
Genotype concordance checks were performed to verify sibling status and eliminate duplicate samples, monozygotic twins, and unrelated subjects.
Though the possibility of clinician misdiagnosis exists, extensive quality control measures were taken to guard against it, including concordance checks by multiple graders.
As an additional quality control check of internally imputation genotypes we performed genotype concordance checks with the Illumina HumanHap550 GWAS chip.
The backend database has been built on Microsoft SQL Server 2014, with custom SQL algorithms to provide, for example, live concordance checks between reviewers' double coding.
