Your English writing platform
Discover LudwigExact(1)
Call rates were 98.0% (BBCS) and 96.6% (UKBGS); there was no evidence for deviation from Hardy Weinberg equilibrium (P = 0.29 (BBCS); P = 0.92 (UKBGS)), and the duplicate concordance based on a 1% (BBCS) and 5% (UKBGS) random sample of duplicates was 100% for both studies.
Similar(59)
As an alternative, McIntyre et al. recently suggested a measure of concordance based on the Kappa statistic to compare RNA-Seq samples [ 5].
The evaluation of drug exposure data, especially free drug concentrations, is invaluable for understanding the relationship between drug levels and the degree of hERG blockade (Supporting Information Table S1) and QT interval prolongation in vivo, and helps develop a quantitative assessment of concordance based on exposure parameters (Redfern et al., 2003).
Strong concordance based on rank order indicates that many of the centers are picking the same genes and suggests that calibration of p-values and q-values is contributing to the difference in list lengths.
When only lowly expressed genes were included the concordance based on the contingency table diagonal and correlation coefficient steeply decreased whereas the other measures were both hardly affected.
An interesting theory has been proposed that may be related with this concordance, based on the assumption that the potential for angiogenesis varies spatiotemporally in different vascular fields.
Phylogentic trees were generated with MEGA5 (Center for Evolutionary Medicine and Informatics, Tempe, USA) using the neighbor-joining method with percentage concordance based on 1,000 bootstrap iterations.
The nine sites with greater than 99% concordance based on the exhaustive inspection were correctly classified as "high data quality" by LQAS.
To do a sanity check that these features can complement each other, we compute Kendall's coefficient of concordance based on every single DNA sample and summarize statistics over the whole dataset at hand.
For this analysis, instead of using the overall imputation concordance based on the three possible genotypes, we focused our attention on the concordance and missingness rates for the heterozygotes.
DOI: http://dx.doi.org/10.7554/eLife.00731.007 10.7554/eLiFigure3 figureigure 3—figure supplement 1. Accuracy and sensitivity of SNP calling at different cutoffs for SNP concordance based on 3- and 50-fold coverage of simulated data.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com