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Concordance analysis between the re-sequencing data and CGEMS PLCO scan data was assessed for 74 individuals (cases and controls).
Therefore, the intraclass coefficient is used for a concordance analysis between the two modalities measuring the same tumor.
The concordance analysis between the two methods (MALDI-TOF and GenoType) showed agreement in 64 of the 66 cases (96.9%).
A concordance analysis between predicted and observed values of FPC showed that the 95% limits of agreements were ±9.3 percentage points (see Fig. A4 in the Supplementary file).
The concordance analysis (between affected and non-affected sib pair groups) revealed significance for only one item that was also more prevalent in the schizophrenia sib pair group – gap between first and second toes (p = 0.021) (Table 2).
Three methods including MetaCore analysis for disease and pathway correlations, concordance analysis between array-CGH database and the expression array database, and literature search for copy number variation genes were performed to select novel lung cancer candidate genes.
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A concordance analysis showed agreement between observed and fitted results within a range of ±9 percentage points.
To evaluate the SNP calling from our high-throughput genome sequencing data, concordance analysis was performed between Hanwoo genome resequencing and the SNP chip data.
This suggests that with a sufficient number of sequences, concordance analysis can distinguish between polymorphisms that are in high but incomplete LD.
We performed a concordance analysis using the χ2 test between prognostic variables and the presence or absence of polysomy 17 to detect any differences between polysomic and non-polysomic subgroups.
Apart from this, the success of concordance analysis also depends on the LD between polymorphisms.
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