As far as MdPIN4, MdPIN7 and MdMAX2 are concerned, the transcripts accumulated throughout the experiment in an ethylene-independent manner, whereas no chemical effect was observed on MdARR4 transcripts.
Concerning the second transcript, corresponding to the other strand, 5'RACE-PCR using 5'-ubi primer also showed only one DNA fragment.
The setup appeared suitable to ask the next question concerning the coupling between transcript regulation and de novo protein synthesis.
However, so far no data concerning the correlation between transcript levels of the above mentioned selected pro-inflammatory cytokines CXCL8, CXCL10, calgranulin B and CXCL2 in mucosal biopsies and disease activity indices of UC patients exist.
For A. thaliana and O. sativa, we retrieved data concerning the number of transcripts, the PFAM motifs and the promoter sequences from FLAGdb++ [ 90].
The second significant difference in transcript abundance between zebrafish fully-grown follicle transcriptomes as evaluated by SAGE and the profile defined in ovary cDNA libraries concerned the hsp90β transcript (Table 2).
Another interesting finding concerns the RUNX1T1 transcript upregulation observed in silico study performed for pilocytic astrocytomas by Deshmukh et al. On the basis of the transcriptional regulatory network, they indicated that RUNX1T1, together with four other transcription factors, is within alteration common for pilocytic astrocytomas and glioblastomas [ 38].
Therefore, we performed a literature-based manual curation to collect and organize update available information concerning the gene names, symbols, transcript and protein sequences, active substances, functional description and PMID.
To obtain a better estimate concerning the role of antisense transcripts in establishing the endo siRNA signature we tested the classification of the 378 loci according to the antisense database NATsDB ([ 29]; http://natsdb.cbi.pku.edu.cn/).
This report demonstrates the usefulness of our integrated computational framework for the analysis of transcriptomics data, leading to prediction of experimentally testable and specific hypotheses concerning the functions of expressed transcripts.
FN23 Madison's direction concerning the amendment is omitted in the transcript.
