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Recall that we have 15 concerning annotation terms.
CONCLUSIONS - A new paragraph describing some interesting applications of GASOLINE, concerning annotation transfer and protein function prediction, was added.
Third, a Bayesian model can generate probability for each concerning annotation term, which makes it available to build a more powerful model for automated skin disease diagnosis.
In the last paragraph of this section we sketch some interesting applications of our app, concerning annotation transfer and protein function prediction.
The goal is to model the predictive probability of the concerning annotation terms T, giving the training set D, a prior KGP, and a test sample x, which can be expressed as p(T | D, x, KGP).
This illustrates the unfortunate situation where scientists do not provide feedback concerning annotation errors to databases at the time of discovery, perhaps because they intend to publish them and overlook informing the concerned databases following publication or because they do not wish to devote time to this valuable exercise.
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Concerning on annotation of the HPC-PPIN, we used the Database for Annotation, Visualization and Integrated Discovery (DAVID) system [ 35, 36].
He even gives himself little rules concerning his annotation of books: no messy underlining or highlighting in yellow or pink, just a discreet little dot in the margin next to something he approves of — dots so discreet that they "could almost be a dark fleck in the paper" — and, also, no more than 10 or 15 dots per book.
Concerning gene annotation, previous scenarios of nomenclature diversity and large efforts for gathering all available information on a given species have been replaced by the availability of standard vocabularies extensively used by the scientific community.
Concerning unigene annotations, we first made a homology search using the BLAST program against GenBank ftp://ftp.ncbi.nih.gov/genbank/ and Arabidopsis thaliana ftp://ftp.arabidopsis.org/home/tair/Sequences/ datasets, setting an e-value of 1e-10 as the cutoff value.
The second point concerns the annotation of the sea bass transcriptome.
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