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It is noteworthy that prior PWM information is required when computing the sequence feature.
Since two LTRs of a single LTR retrotransposon have identical sequences at the time of integration, dating the transposition event of a LTR retrotransposon can be achieved reliably by computing the sequence similarity of its two LTRs [ 13].
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This algorithm improves the widely used RMA [ 32] by including an extra step to adjust for non-specific binding, and computing the sequence-specific affinities between probes as described [ 33].
The proposed database provides information about sequence features generated by exhaustively computing the sequences of the complete genome.
Next, we compute the sequence ({y_{n}}).
Let, and compute the sequence by the iterative algorithm (1.15).
Algorithm 2. For arbitrarily chosen initial points compute the sequence and by (3.9).
For arbitrarily chosen initial points compute the sequence and by (3.8).
The new algorithm was defined to compute the sequence { Ψ m } m = 0 + ∞ as follows: Ψ 0 = y ( t 0 ) ; (22).
To compute the sequence, we can first obtain values Δ 1 ( 0 ), Δ 1 ( 1 ), …, Δ 1 ( | N 1 | ) by simple calculations.
With this technique, we compute the sequence of transitions from steady state to chaotic flow in a two-dimensional lid-driven cavity of aspect ratio 0.8, 1.0, and 1.5.
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