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This assumption, coupled with the Richardson and Zaki formula, leads to a modified Richardson and Zaki formula for computing the composition of the mixed layer in a binary solid-liquid fluidized bed.
The subject data are filtered before compositionally adjusted scoring matrices are computed, and occurrences of the X character are ignored when computing the composition of a sequence.
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In this section, we outline the algorithm used to compute the composition of database sequences and to apply composition-based statistics in TBLASTN.
BLAST identifies windows that contain likely coding regions and then uses these windows to compute the composition of the hypothetical proteins.
The model computes the composition depth profiles of the alloy constituents in the alloy as well as the evolution in the phase fractions in the alloy as function of oxidation time.
The effect of a compositional field is analyzed here, using an extension of the moving point source to compute the composition in the melt ahead of a twisting crystal.
Second, we compute the sequence compositions of DNA segments in H3 nucleosomes and in H3K4me3 nucleosomes separately, whereas Segal et al. computed the composition in extracted DNA segments in all forms of nucleosomes after treatment of micrococcal nuclease.
This characteristic is based on the relationship between RNA codons and their translated amino acids, suggesting the possibility that an amino acid may mutate into another amino acid (Additional file 1: Table S3) [ 40, 41], and therefore computes the future composition of a type of amino acid according to its current composition in a protein and mutating probability.
Using MEGA, we computed the base composition of each taxon, and performed relative tests of evolutionary rate among taxa, allowing to identify taxa susceptible to be artefactually joined because of similar nucleotide composition or evolutionary rates (long branch attraction).
With the aid of AspenPlus™, a systematic thermodynamic analysis of this process has been carried out by the total Gibbs free energy minimization method, which computes the equilibrium composition of synthesis gas (syngas).
Given a set of STAT-related PWMs and an input promoter sequence, STAT-Scanner first computes the nucleotide composition of the input sequence in order to select the nearest background model, and searches TFBSs whose affinity scores are larger than the threshold, with the PWMs constructed by the chosen background model.
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