Expected heterozygosity [56], allelic richness, and unique allele richness were computed using scripts written in Matlab (The Mathworks, Natick, Massachusetts).
With this information, the Construct Design Module can compute a script of pipetting instructions for the Tecan liquid handler to perform all the necessary liquid handling events needed to pool template DNA with amplimers, polymerase, and buffers within individual wells of a 96-well PCR plate.
Ch is an embeddable C/C++ interpreter for cross-platform scripting, shell programming, numerical computing, and embedded scripting.
We don't immediately think of computational cores, cloud computing, APIs and Python scripts.
Sliding window analyses were computed using custom scripts written in the python programming language (www.python.org), except FST, which was computed with a sliding window tool within VCFTOOLS.
The EEG spectral power was calculated with a Spike-2 script computing a fast Fourier transform on 10 s EEG epochs (0.1 Hz resolution).
The author thanks Jun Li and Joshua M. Akey for help on the HGDP-CEP database and Oscar Lao for generously sharing script computing the informativeness of assignment.
Technical replicate DNM concordance was computed using PERL scripts.
The connection to the geometry handling software is realized via a Matlab interface which facilitates script computing, data management, and post-processing.
SeAMotE operations are executed by C programs, whereas significance estimation, pattern filtering and sequence logo design are computed using R scripts and the Biostrings, stringdist and seqLogo packages.
