Sentence examples for computing puzzle from inspiring English sources
IBM researchers say they've solved a big piece of the quantum computing puzzle with a new system for protecting against errors that can crop up among quantum bits, or 'qubits.'qubits
University HPC centers, like Hyak at UW, are not free either, but they, too, are critical pieces of the scientific-computing puzzle.
Site-wise likelihood values were computed by Tree-puzzle (JTT model, gamma distribution with eight categories plus invariant sites), and were subsequently used as inputs for CONSEL [22] with the default settings.
Site-wise log-likelihoods for each test tree were computed with TREE-PUZZLE 5.2 [ 74] using the -wsl options.
Chi-square tests of deviation from average amino acid content in the dataset were also computed using Tree-puzzle [ 44].
The topologies were visualized using TreeView (Page 1996), and site-wise log-likelihood values were computed with TREE-PUZZLE program under the LG+G model (Schmidt 2009).
The evolutionary distances were computed by TREE-PUZZLE where the parameters were set to the JTT substitution model, the mixed model of rate heterogeneity with one invariant and eight gamma rate categories, and using the exact and slow parameter estimation.
The consensus tree from 100 bootstrap replicates was computed with TREE-PUZZLE [ 34] and the percentages of bootstrap trees supporting a split in the consensus tree were used as branch support values.
TREEVIEW [ 53] was used as the tree viewer and editor, and site-wise log-likelihoods were computed with TREE-PUZZLE under the GTR + G8 + I model with substitution matrix parameters estimated by MrBayes.
Neighbor-Joining (NJ) trees were calculated by the NEIGHBOR program of the PHYLIP package [ 25], using Maximum Likelihood (ML) distance matrices (JTT model including a Γ-correction) computed by TREE-PUZZLE 5.1 [ 26].
