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Finally, GENCO computes the base discount after running a cost-optimization problem.
The total partition function including the initiation term is therefore McCaskill's algorithm [ 31] computes the base pairing probabilities from the partition functions of subsequences.
Instead, a separate program, RNAplfold [ 38], computes the base pairing probability averaged over all sequence windows that contain the putative pair.
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Also, we compute the bases and α-, β- and γ-duals of these sequence spaces.
Also, we give some inclusion relations and compute the bases and α-, β- and γ-duals of these sequence spaces.
Expression measurements were transformed by computing the base-two logarithm before further analysis.
We first computed the stem base of Kcom, the combined context for simulations and data.
The function is defined by (A.2). and computes the MI based on the noise variance.
We adopted the method of Chou and Talalay and computed the CI based on the data from cell-based experiments.
Compute the ISFs based on the result of topological analysis.
Finally, we computed the CCI based on all previous diagnoses recorded in the Danish National Patient Registry.
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