In this section we present the available text computer readable file formats that are used to save and load trees.
BioModels provides the model files in various computer readable file formats such as SBML, Octave (m-file), Scilab and BioPAX, whereas DOQCS provides the model files in GENESIS file format (51, 52).
Among its services, the Ascension converts paper documents and handwritten notes into computer-readable files — known as OCR.
For this purpose, it was necessary to develop a graphical language (meaningful to humans), a computer-readable language (onto which the graphical language can be mapped) and software that would allow charting a large map of molecular interactions and, simultaneously, creating a computer-readable file (serving as a database).
The CD-ROM displays all these data, as well as 134 additional data files, in PDF format and in fully documented computer readable standard electronic files (SELF and ELDATA t.
Additional (computer-readable) mapping files and validators may be developed to allow checks for e.g. all steps between a "minimal sensible file" and a "strictly MIAPE-conform file".
However, SBML and BioPAX are the most useful file formats till now, as these are xml based, computer readable, easy to access and most importantly, these file formats use specific legends or graphical notations to annotate the pathway species (proteins, ions, complex, genes, etc).
All collected meta information is presented in corresponding experiment descriptor files in both human and computer readable form.
The large amounts of data required are stored in computer readable formats in data libraries and include the general purpose files used for neutronics calculations.
Unlike simple computer login passwords — which can often be guessed or bypassed to get to readable files — disk encryption scrambles files so they can't be read without the correct key.
The services, implementing the OpenTox API for compounds, datasets, and features, enable importing arbitrary files with chemical structures and their properties, allowing linking to computer readable information about the data fields, as well as keeping provenance information.
