Therefore, we computed lists of putative targets without enforcing a seed region and with enforcing a seed at the conserved Yfr1 motif.
For each of these choices of r, we computed a list of all antichains in the set { 0, 1 } r and used the list to sample antichains uniformly.
Second, for the list retrieved by relatedness, the recall and precision are 0.893 ±0.1022) and 0.910 ±0.0866), respectively, suggesting that our computed journal list is closely related to a user's information needs.
For each of the eight tissues in analysis, we computed the list of Membranome genes up- and down-regulated in the primary tumors as compared to the corresponding cell line, with the same tumor tissue origin (Table S3).
We computed a list of DE genes (Tables 4 and 5) as previously described [ 16], performing the analysis at the probe level.
A minimum of 5000 events was computed in list mode using log-amplified fluorescence signals and linearly amplified side- and forward-scatter signals.
Finally, we asked them to evaluate the quality and usefulness of our computed journal list based on the journal they access the most.
Every patient was assigned following a computed randomized list to High frequency chest wall oscillation (HFCWO) or to chest physiotherapy (CPT) or to medical therapy only (control group).
Performance measures: The recall at a rank k is the number of positives in the k top ranks of the computed ranking list divided by the total number of positives, i.e. the members of the respective validation group.
In order to identify tissue-specific transcripts we next computed a list with all the probes called "present" in the tissue of interest and "absent" in all other tissues (see Methods) [See Additional file 2].
