Your English writing platform
Discover LudwigExact(1)
The remaining ones were used to compute the majority rule consensus tree (MrBayes command allcompat), the posterior probability of clades and branch lengths.
Similar(59)
The remaining trees were then used to compute the majority-rule consensus tree and to calculate the posterior probability of each bipartition.
For each run, we computed the majority consensus of the obtained trees by means of the PAUP 4.0 program.
To calculate the final species tree T with bootstrap support values, we computed the majority consensus tree using Dendropy version 3.12.2 [ 54].
Even more modest subsampling effort, for example one allele per species and two loci, was more likely than not (>50%) to identify the correct species tree topology, indicating that in nearly all cases, computing the majority-rule consensus tree from replicated subsampling provides a good estimate of topology.
The first 200 trees (representing 2000 cycles) were discarded as burn-in, and the remaining 11,000 trees from each chain in each dataset were used to test for convergence and compute the 50% majority rule consensus tree.
These were then imported into PAUP* 4.0b10 to compute the 50% majority rule consensus tree.
The combined tree files were then imported into PAUP (Version 4.0b10) [ 56] to compute the 50% majority rule consensus trees.
The first 25% of trees were discarded as burn in and the posterior consensus was computed by selecting one tree out of every two to compute the 50% majority consensus tree.
The first 300 trees were discarded as "burn-in", and the remaining trees from each chain in each dataset were used to test for convergence and compute the 50% majority rule consensus tree.
The first 300 trees were discarded as "burn-in", and the remaining trees from each chain were used to test for convergence and compute the 50% majority rule consensus tree.
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com