Sentence examples for compute conservation from inspiring English sources

We derive and evaluate high order space Arbitrary Lagrangian Eulerian (ALE) methods to compute conservation laws on moving meshes to the same time order as on a static mesh.

We also applied phyloP program [ 32] to compute conservation score for each nucleotide site.

Such conflicting conclusions may be a result of the different datasets and methods used to compute conservation.

A simple conservation analysis of the amino acids based on this multiple alignment allowed us to compute conservation, quality and consensus annotation for a specific region.

The phastCons program computes conservation scores based on a phylo-HMM with two states (conserved and non-conserved regions) that correspond to the posterior probability that a given alignment column is generated by the conserved state of the phylo-HMM [ 48].

To estimate the probability that each nucleotide belongs to a conserved element in the multiply aligned sequences, phastCons computes conservation scores based on a phylogenetic hidden Markov model [ 62].

Comparison of several different methods for computing conservation laws can be found in [21, 27].

We used RNAfold to re-fold mouse hairpin sequences and their aligned sequences from other genomes, and computed conservation with RNAdistance [65].

Some predictors [ 14, 37, 40] use previously developed programs for computing conservation [ 128- 130, 174- 176].

To identify the degree to which a motif is under higher evolutionary constraints than would normally be expected by chance alone, we computed "conservation ratio".

For example, in conservation analysis, gaps in alignment are frequently treated as missing data when computing conservation scores [ 49], but misalignments are less likely to occur at regions of high conservation [ 50] (Additional file 1: Fig. S9).