Sentence examples for computational scans from inspiring English sources
Using genome-wide computational scans, based on mapping "mate-paired" BES from each Oryza species to the Refseq, all putative major sites of genome alteration along the phylogenetic path of Oryza were recovered.
Thus computational scans for SNPs within ESR motifs may instead largely identify SNPs within ESR-motifs with little or no function in splicing.
Computational scanning of 2.8 kb APRD region revealed two consensus BRK binding sites.
However, computational scanning of the target exonic sequence for previously reported SELEX consensus RNA binding sequence recognized by B52 [40], [40], failed to reveal any match to this sequence, suggesting that B52 interacts with a set of distinct RNA sequences to regulate the eyeless splicing event.
High-throughput sequencing of conserved and novel small RNAs is widely used for computational scanning of genomic sequences in search of miRNA genes.
The wide spread of the U12-type spliceosome in eukaryotes and its independent loss in distantly related species was recently studied by computational scanning for spliceosomal snRNA genes in 149 eukaryotic genomes [ 14].
A computational scan of CNMSs for known cis-regulatory elements showed that light responsive elements were clustered in the region of CT/GA repeats, as well as salicylic acid responsive elements in the (CTT n/(GAA)n sequences.
For this, it allows performing computational alanine scanning of a protein-protein interface within a few minutes.
Computational alanine scanning and analysis of structure affinity relation were used to predict the inhibitor protein binding modes.
We have analyzed the stability of the complex and characterized its interactions at the atomic level by performing free energy calculations and computational alanine scanning.
Furthermore, Drugscore-PPI was used for computational alanine-scanning of a dataset of 18 targets with a total of 309 mutations to predict changes in the binding free energy upon mutations in the interface.
