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Thirdly, the usage of more extensive compound descriptors was investigated (up to 4096 bits and additional physicochemical descriptors) which was not possible with the RF and NB models due to computational restraints.
The liquid drop model (LDM) was developed to perform radiation damage studies in metals in an ionic energy range where molecular dynamics cannot be used because of computational restraints.
However, computational restraints and constraints of clinical reality, for example, time, cost, radiation exposure, and last but not least image distortion when large metallic implants are used, currently preclude the creation of full complex customized models of a region of interest.
We resampled layers for the common carp native range only to 0.05×0.05° resolution because of the vast area of analysis and associated computational restraints.
This decision was made partially due to computational restraints, but mostly because there was already an abundance of data to choose from in the analysis of the RAD-seq data.
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We have extensively tested a recently reported method for studying a protein's TSE, utilizing φ-value data from protein engineering experiments and computational studies as restraints in all-atom Monte Carlo (MC) simulations.
In computational structural biology, distance restraints from chemical cross-linking experiments have so far been employed as an upper limit on the Euclidean distance between a pair of cross-linked amino acids (Kaimann et al., 2008; Shandiz et al., 2007).
In sum, this study confirmed key structural elements specific to the HIV-1 frameshift region model developed using SHAPE probing data as knowledge-based restraints to computational folding algorithms.
Substantial progress has been made in designing experimental protocols for the measurement of residual dipolar couplings, in sensitivity optimization of triple-resonance experiments and in detection of hydrogen bonds and in developing computational methods for structure refinement using NMR restraints.
Future studies will focus on verifying which disease mutations are indeed destabilizing as well as providing experimental restraints for refinement of this computational model.
The ultimate goal of this novel strategy is to examine oligosaccharides in complex with proteins, in which case the C data can be augmented with principal order parameters determined from the protein and conformational restraints for the oligosaccharide from computational simulations (Yu et al. 2007).
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