Sentence examples for computation of sequence from inspiring English sources

We used information in proteins from the non-reference species only for computation of sequence divergence (via ortholog multiple sequence alignments).

A total of 213 Alu subfamilies have been reported based on a thorough computation of sequence homology in the human genome [ 2].

Compared with previously published desktop-based cis-regulatory sequence analysis tools such as TOUCAN (Aerts et al., 2003) or Sockeye (Montgomery et al., 2004), iMotifs is more focused on visualization and computation of sequence motifs, although it also supports visualizing scored motif matches in sequences.

Common tasks comprise the identification of sequence motifs from nucleic acid (DNA/RNA) or protein sequences (e.g. promoter or termination activity, recombination or splicing sites), as well as the computation of sequence properties that are mechanistically linked to particular phenotypes (e.g. codon usage or propensity to form transmembrane protein domains).

For example, phylogenomic trees derived from genomic abundance counts of FF and FSF domains [ 28, 30] are less prone to the effects of HGT as shown in a number of studies [ 29, 31- 34] and do not require computation of sequence alignment, making them free from the problems resulting from characters that are not applicable to data sets (i.e., insertion/deletions in sequence alignment) [ 35, 36].

Motivation: In the analysis of homologous sequences, computation of multiple sequence alignments (MSAs) has become a bottleneck.

This method uses convolution-style sliding-window computation of all sequence changes for each complete chromosome sequence resident in RAM.

The de novo aspect of our approach makes it easily applicable to newly or partially sequenced genomes since it is not homology-based nor it requires the computation of multiple sequence alignments among related organisms.

The paper is devoted to the computation of zero sequence series impedance (in Ω/km units) (self and mutual) in double-circuit overhead lines (OHLs) with one or more earth wires.

Typically, molecular phylogenetic tree construction starts from a set of sequences (DNA or proteins), computation of a multiple sequence alignment, and then, based on the multiple sequence alignment, construction of a tree using one or several optimization criteria, such as distance, maximum parsimony, minimum evolution, maximum likelihood, and Bayesian inference.

In brief, the model-based computation of the activation sequence of a single beat can be described as follows: For an assumed model activation sequence the ECG is simulated and compared with the measured ECG.