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In addition, a software program written in C for the PCA computation is executed on a personal computer.
The computation is executed by sets of blocks of threads.
Comprehensive accounts about how the preconditioners are coded, what storage is required and how the computation is executed for a given accuracy are presented.
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The computation was executed on a personal computer with an Intel Xeon 3.00 GHz CPU.
Frequency-domain computation was executed at the frequencies of five equal logarithm spacings in one decade in the frequency range of 105 10−2 Hz.
The structure of the course was as follows: First, students were instructed on reading the predefined codes to understand what outcomes will be produced when computation was executed.
The computation was executed on a standard laptop; it involved 1.6 M degrees of freedom and required 100 s for the pre-computation, and 0.3 s for the actual solve.
For the combined input set, the following computation was executed: all sequences were pairwise aligned with all other sequences using BLASTN with default parameters [ 83].
The computation of the partition of the 1 152 121 input sequences by cd-hit-454 and otupipe both took ∼5 min. The DBC454 computation was executed in parallel on 16 CPUs and took ∼13 min (wall clock time), which actually corresponds to a total of 3.6 h of CPU to generate a hierarchical classification with 23 different levels (i.e. ∼10 min per level).
The 'host' code, used to control the GPU, is executed on the CPU; whereas the 'device' code, performing the majority of the computations, is executed on the GPU.
■ Computational complexity: All the computations are executed at all of the participating parties.
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