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Our previous model of the network comprising of cAMP-PKA and MAPK pathways with respect to the expression of FLO11 had shown that cAMP-PKA pathway was more sensitive than MAPK pathway [16].
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Here, we present a modular steady state approach to quantify the network comprising of cAMP-PKA and MAP kinase pathways involved in the regulation of FLO11, a gene which is required for pseudohyphae growth in Saccharomyces cerevisiae under nitrogen starvation.
We analyzed an integrative network comprising of cAMP-PKA, MAPK and TOR pathways with respect to varying concentrations of ammonium sulphate using experimental and steady state modeling approach.
In the network comprising of cAMP-PKA and MAPK pathways, we did not observe the presence of double negative feedback loop which can contribute towards a bistable response.
We have analyzed the switching on and switching off function of the expression of FLO11 by considering a network comprising of cAMP-PKA, MAPK and TOR pathways, whose involvement in filamentous growth is well studied.
Further, we simulated the dose response curve by incorporating the TOR pathway into the network comprising of cAMP-PKA and MAPK pathways to match our experimental observation with regard to the expression of FLO11.
This indicated that the signaling structure present in the network comprising of cAMP-PKA and MAPK pathways do not contribute to the bistable behavior as observed in our experiments.
We also simulated the dose response for the entire network comprising of cAMP-PKA, MAPK and TOR pathways including the negative feedback on the activity of Tor (see Figure 8a).
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