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According to the sequences of the 102 clones, 27 loci, 17 loci, 4 loci, and 54 loci were dinucleotide, trinucleotide, tetranucleotide, and compound repeat sequences, respectively.
The markers can be retrieved by use of multiple search parameters including chromosome number(s), microsatellite types (simple or compound), repeat nucleotides (1 6), copy number, microsatellite length, pattern of repeat motif, and chromosome location.
The 48 SSR markers represented 15 perfect and five compound repeat SSRs of dinucleotide, 26 perfect and one compound repeat SSRs of trinucleotide, and one compound repeat SSR of pentanucleotide (Table 2).
The distribution of simple and compound repeat types were 88 and 12%, respectively.
Gradually due to background mutation simple repeat gets converted in compound repeat.
These locus specific markers detected 232 microsatellite motifs that could be classified into interrupted and compound repeat types (Table 2).
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The database can be accessed by perfect repeats, compound repeats, repeat cluster and polymorphic repeats.
A total of 323 SSRs were categorized as compound repeats.
Adjacent microsatellites ≤10 nt apart were considered compound repeats.
Of the repeat regions identified, 74.5% were perfect, 6.5% were interrupted and 19% were compound repeats.
Compound repeats can be sought by user's customized repeat combination.
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