Sentence examples for composition of the read from inspiring English sources

The resulting running times and accuracies depend heavily on the exact composition of the read set with respect to the types of matches.

This model takes into account the ℓ-mer composition of the read and how similar it is to the set of ℓ-mers of reads that have already been placed in this bucket.

Nucleotide composition of the reads appears biased at their 5′end, with U being the first nucleotide on almost 60% of the reads.

Overall, horse reads recovered from the DNA phosphatase treatment were found to be slightly shorter than reads recovered without DNA phosphatase treatment and the base composition of these reads was similar to those recovered following the use of a 95°C denaturation temperature.

We examined the lengths and nucleotide composition of these reads and found two characteristics similar to those of general nucleosome cores: First, a predominant length of ~155 bp, slightly larger than the 147 bp typical of canonical H3 nucleosome core DNA in other organisms.

This estimate is often incorrect when libraries have an unbalanced base composition in this part of the read.

A summary of the number of reads and the composition of reads generated from the RNA-seq data is shown in Table  2 while steps taken to assemble the transcriptome from clean reads are shown in Figure  1.

IRES-driven translation efficiency of the second cistron in bicistronic mRNAs is influenced by the composition of both reading frames [ 12].

Under the assumption that each WGS insert is sampled independently from the bacterial population - hence, the composition of reads represents that of the population - we discovered that the normal:flipped genotype ratio is 1 1, which is expected of a PV at equilibrium where the forward and reverse flipping rates are equal [ 16].

The initial reads were mapped to the human genome (minimum match length 80%; mismatch allowed 10%) using HIVE hexagon [ 55] and the unaligned reads were downloaded (Additional file 1: Figures S1 and S2) and CensuScope was run to obtain the taxonomic composition of the non-human reads.

Finally, variation in extraction techniques and/or sample preparation kits have been shown to affect the composition of sequence reads [ 8, 9].