Actually, the study the nature of organic substances, due by their variable composition and their propensity to undergo chemical and biological degradation processes is one of the most difficult task.
As the name suggests, it consists of two kinds of properties: (1) Biochemical properties, including two features: amino acid composition, and secondary structural propensity; (2) Physicochemical properties, including five features: polarizability, solvent accessibility, normalized van der Waals volume, and polarity [40].
In this paper, we analyzed benchmark datasets and report that linear B-cell epitopes and non-epitope sequences have distinctive residue composition and position-specific propensity patterns which could be used for epitope discrimination in silico.
We discovered that flanking sequences of cleavage sites possess distinctive residue composition and position-specific propensity patterns which could be helpful in discriminating the cleavage sites from non-cleavage sites in silico.
Moreover, names of the current eight clusters are electric properties, hydrophobicity, alpha and turn propensities, physicochemical properties, residue propensity, composition, beta propensity, and intrinsic propensities.>>> To provide different subsets of HQIs from the consensus clusters, three different approaches are used.
After clustering of enhanced AAindex database, we have found three (3) new clusters, overall eight (8) clusters, named as Electric properties, Hydrophobicity, Alpha and Turn propensities, Physico-chemical properties, Residue propensity, Composition, Beta propensity and Intrinsic propensities.
One study that focused solely on ranking of pockets previously found by other pocket detection algorithms introduced an approach based on amino acid composition and relative ligand binding propensities of different amino acids termed PLB index [29] (we compare our proposed method with PLB index in results section).
This indicates that intrinsic raccoon behaviour and propensity to disperse are more important than landscape composition in shaping patterns of interindividual genetic distance at the scale of the study.
Bisphosphonates may cause changes in bone matrix composition and bone mechanical properties, increasing the propensity for accumulation of microdamage.
Multivariate and propensity score matching software with automated balance optimization.
