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Analytic expressions have also been derived in terms of the key process performance indices: heavy component enrichment and recovery, and light product impurity.
The corresponding cellular component enrichment analyses are shown in Tables S13 S14.
GO enrichments include three parts: biological process enrichment (BP enrichment), cellular component enrichment (CC enrichment), and molecular function enrichment (MF enrichment).
The cell component enrichment revealed that NaCl up-regulated in a p38 SAPK dependent manner many genes encoding members of the ribonucleoprotein complex, including several proteins of the large and small ribosome subunit.
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We found cellular component enrichments for the RR motif in 'cytoplasmic membrane bound vesicles' and 'membrane bound vesicles,' both of which are components associated with vesicular protein trafficking.
The most dominant functional categories in the cellular component domain were membrane part (enrichment score 4.90), synapse part (5.73), and membrane (6.16).
The molecular function and cellular component term "enrichment status" and "hierarchy" of pollen-enriched genes were analyzed by use of EasyGo software (a web server, http://bioinformatics.cau.edu.cn/easygo/) [ 73].
Analysis of development stage-enriched transcripts in the molecular functional and cellular component terms "enrichment status" and "hierarchy" showed that cation transmembrane transporter and antiporter activity had statistical importance in TCP.
The GENECODIS tool [32] was also used for the gene ontology analysis of the ACTMOD network, and specifically for the cellular component (CC) enrichment analysis of the latter.
Table 1 includes the GO categories (biological process, molecular function, and cellular component) and enrichment analysis results for the 1,062 probe sets.
Nonredundant GO terms in biological process, molecular function, and cellular component with enrichment ratios >4 and a p value < 0.05 were selected.
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