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What data would be collected, how and what kind of biological questions such a complex catalogue would serve to address.
The list of 27 known cooperative TF pairs are derived from biochemically well-defined transcriptional complexes within the MIPS complex catalogue.
Yang et al. [ 19] compiled a high-quality benchmarked dataset with 27 pairs of cooperative TFs from MIPS functional complex catalogue.
Wang et al. (2009) [ 17] employed ChIP-chip data, TFBS data, PPI data and MIPS complex catalogue data and developed a supervised learning approach to predict TF cooperativity using Bayesian networks.
Indeed, 88.2% of complexes in the CYC2008 manually-curated yeast complex catalogue [ 25] have a diameter of at most 2 in the DIP PPI dataset (connected complexes with at least three proteins were considered in this calculation).
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Yang et al. [ 13] compiled a benchmark set of 27 known cooperative TF pairs from the MIPS transcription complex catalogues [ 21].
Rambert, which started as a ballet company in 1926 before switching to contemporary dance, is in possession of an especially large and complex back catalogue.
It is unlikely that literary critics will ever applaud Weiner's work for these qualities, because literary criticism, at its best, seeks to elucidate the complex, not to catalogue the familiar.
Mass spectrometry has been used to identify protein complexes, the components of the yeast nuclear pore complex, and to catalogue 1484 proteins from yeast in log-phase.
Evaluation results of accuracy and homogeneity, using benchmark complexes from CYC-2008 candlogue and GO-CC, of different clustering methods in Gavin network are listed in Tables 2 and 3.
Our results with the ESHRE ESGE classification suggest that by separating malformations of the corpus uteri, cervix and vagina, this classification system can be more useful than ASRM for cataloguing complex anomalies of the female reproductive system (Fig. 4; Supplementary data, Fig. S1) and transitional cases (Acién et al., 2009).
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