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So it is more likely that Sub1A type submergence tolerance regulates complete submergence in Rayada rice.
Fig. 3 Diversity in the response to partial to complete submergence in rice.
Overall, our analysis provides a possible transcriptional regulatory mechanism underlying the survival of the rad mutant under complete submergence in an energy crisis condition and develops hypotheses for further experimental validation.
The experiment was conducted under complete submergence in an outdoor lagoon located at the Rice Science Center, Kasetsart University, Kamphaeng Sean Campus, Thailand, during the dry season of 2013.
It should be noted that all of these RILs are already fixed for the SUB1 gene, which provides additional protection from complete submergence in both stagnant flooding and irrigated environments.
It is interesting to notice that the SUB1A-like genes found in O. nivara (ONIVA01G39120) and O. barthii (OBART01G06430), were not on Chr 9, but on Chr 1. Constitutive and conditional expression of SUB1A significantly increases tolerance to complete submergence in O. sativa (Fukao et al., 2006; Xu et al., 2006).
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However, few landraces can tolerate transient complete submergence experienced in flash-flood areas or in longer-term partial floods as in stagnant flood and deepwater areas.
Levels of SUS1 and ADH1 transcripts increased under complete submergence stress in both 'FR13A' and 'TL3'TL3
These cultivars are low yielder but possess one or more of the adaptive traits required for this ecosystem, which range from temporary submergence of one to two weeks, long periods of stagnant water, or daily tidal fluctuations that may sometimes cause complete submergence as in coastal areas.
Most of the Sub1 varieties, which can withstand around 2 weeks of complete submergence, perform poorly in these conditions.
Tolerance to complete submergence is recognized in a limited number of Asian rice (Oryza sativa L). varieties, most of which contain submergence-inducible SUB1A on the polygenic SUBMERGENCE-1 (SUB1) locus.
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