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Nevertheless, the paper presents the complete set of reactions in the nitrogen submechanism.
The complete set of reactions and rate constants used are described in the SI Figure S4 and Table S2.
Hereinafter, we apply the Boolean rules relating genes/proteins and reactions included in different metabolic network reconstructions [ 50, 51], which finally leads to the definition of the set H of highly/over expressed reactions, the set L of lowly/down expressed reactions and the set M = R- H- L of medium expressed/invariant reactions (where R is the complete set of reactions).
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This allows us to write and solve the complete set of reaction-diffusion equations for Ste11, Ste7, Fus3 and Kss1 in the cytosol.
The complete set of reaction vectors is called reaction vector matrix.
The complete set of reaction conditions for the sequential hydrolysis assays is shown in Table 2.
The complete set of reaction rules is able to effectively navigate the chemistry of biodegradation, capturing existing reactions, adding new connections between known compounds, and generating novel reactions.
Metabolism is the complete set of chemical reactions taking place in living cells.
Metabolism, which comprises the complete set of biochemical reactions in a living cell, is one of the most complex cellular processes.
From the community enzyme function profile, the community metabolome, which is defined as the complete set of possible metabolic reactions that can occur in a bacterial community, can be modeled (Fig. 3c).
For example, YP CO92 appears to have the ability to metabolize rhamnose because a complete set of genes and reactions connects imported rhamnose to central metabolism, but FBA analysis suggests that the absence of L-lactaldehyde degradation prevents this pathway from being utilized.
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