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A complete list of altered gene regulation in each of the conditions is given in Additional file 15.
A complete list of altered genes, including their putative function, can be found in Additional file 1 (leaves) and Additional file 2 (roots).
Even though no direct evidence points a role of NF-κB, angiostatin promotes mRNA expression of RelB as well as many NF-κB target genes, namely E-selectin, intracellular adhesion molecule-1 (ICAM-1), Cyclin D1, p21/cip1, and FasL (for the complete list of altered gene expression, see reference [ 45]).
Table S3 contains the complete list of altered 3′ lengths.
Functional modules analysis showed alterations in the Cell-cell signaling and Extracellular region modules (Table 2, see Additional File 2 for complete list of altered modules).
As only a subset of genes in a module may contribute to its expression signature, core results are shown in Table 2 (complete list of altered modules and its genes can be found in Additional File 2).
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Gene expression profiles of differentiating myoblasts after deletion, rescue, or overexpression of Ankrd2 were obtained as outlined in Supplementary Figure S2c and the complete lists of altered genes can be found in Supplementary Datasets S1, S2, and S3, respectively.
A complete list of the significantly altered protein abundances with aging and their canonical pathways are given in Table S2.
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