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Both range from 0 (no disequilibrium) to 1 (complete disequilibrium), but their interpretation is different.
The higher the value of Wall's B the greater the proportion of neighboring sites in complete disequilibrium.
Because the 31 significant SNPs in HvLDI were complete disequilibrium (r = 1) with each other, they could be regarded as one variant (Additional file 5: Figure S2).
Haplotype analysis revealed that the polymorphisms at position 129 and 131 are in complete disequilibrium linkage, whereas the polymorphism at position 208 occurs independently [ 14].
This was not surprising since, in the situation where the QTL and the markers were at equilibrium, there were more sires carrying the favourable QTL allele than in the "complete disequilibrium" case studied in Table 1.
Once disequilibrium is accounted for at this locus, the two significant results collapse down to a single epistatic effect between a distal SNP (rs13168712) approximately 2.1 Mb apart from two proximal SNPs (rs11744596 and rs2932777) that are in complete disequilibrium.
Similar(52)
SNP ALGA0054078, H3GA0027863, MARC0003458, and MARC0027588 (79 Mb) were in complete linkage disequilibrium with each other and in moderate linkage disequilibrium (r2 = 0.36) with DRGA0009645 (95 Mb).
The 9 bp insertion, and SNPs 1, 6, 9, and 10 were in complete linkage disequilibrium (D' = 1), while SNPs 2, 4, 5, and 14 were also in complete linkage disequilibrium (D' = 1).
Sites -301 and -308 (relative to the start of transcription) are in complete linkage disequilibrium and the minor C alleles at sites -1 and +3 are in complete linkage disequilibrium.
All eight SNPs were in almost complete linkage disequilibrium.
The two polymorphisms were in complete linkage disequilibrium.
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