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We also acknowledge that comparative genome analysis using a partial bank of sequences in catfish and a more complete databank in zebrafish could potentially lead to a bias.
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For a representative set of NCLDVs, we used a BLAST approach seeded with genes identified as host-derived against a complete viral databanks purged from NCLDV sequences.
The SAIL databank includes the complete PEDW database, which records all inpatient and day case admissions for residents of Wales.
Finally, HMM searches were performed with HMMER 3.0 (hmmer.org) against a local databank of 841 complete bacterial genomes (only one representative per species), including 435 from Proteobacteria downloaded from the NCBI ftp Genomes server using a model built on the multiple alignment of all previously recovered Reb proteins, but no additional homologs were found.
One of the main challenges encountered by genome databanks is that complete genomic sequences are submitted with a heterogeneous and (too) often crude gene annotation [ 1- 4].
The linkage by the unique personal identification number to the Danish Cancer Registry and the Danish Pathology Databank ensures valid and complete ascertainment of incident cases, and the detailed baseline information enabled us to control for many possible confounding variables.
A low proportion of plant protein data is found in public databanks, whereas EST collections have a more complete information set, even though redundant.
The complete lists of upregulated and downregulated genes are available at ArrayExpress databank with accession number E-TABM-976 (see also Additional file 2, Tables S3, S4).
These links are filled in by using the reaction databank and suggesting the list of reactions required to complete the network.
While 2.757 kb ORF seems to encode the complete protein (918 amino acids; 101.8 kDa protein), there are no databank entries corresponding to 2.757 kb transcript of this gene.
The national hospital databank, which receives discharge diagnoses of all Dutch hospitals, completes case ascertainment.
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